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//===============Header File==================
#include <iostream>
#include <sstream> //stringbuf
#include <utility> //exchange

//Couple rules:
//Characters given through the getter functions have to be removed from the buffer.
    //This is so that bufferEmpty() == buffer.in_avail() > 0 basically always.
    //skipWhitespace doesn't remove the text from the buffer, but it does return the number of characters.
//nextWord will trim whitespace before the word
//nextInt will trim non-numbers before the number
//hasNextInt and hasNextWord will trim the whitespace. If you think you need it, you should get nextWhitespace before doing any of those.
//Whitespace after a word or an int is left on the buffer.
//nextWhitespace will (get and) remove whitespace until the end of the line, including the newline character, but stops before the next line.
    //nextWhitespace won't read the next line when called before the end of the line, and it won't prompt the user for the next line if interactive.
        //If nextWhitespace is called after reading the end of the line, then it will read a new line into the buffer, which will prompt the user.
    //It acts like nextLine, but if there's something non-whitespace on the current line it stops there.
class Scanner {
    public:
        std::stringbuf buffer;
        std::istream& input;
        
        Scanner(std::istream& in = std::cin) : buffer(), input(in) {}
        
    //Buffer debugging
        bool fillBuffer();
    
        bool bufferEmpty();
        void printBufferEmpty();
        std::string getBuffer();
        size_t bufferLength();
        void printBufferStats();
    
    //Int
        bool hasNextInt();
        int nextInt();
    
    //Word
        bool hasNextWord();
        std::string nextWord();
    
    //Line
        bool hasNextLine();
    
    //Whitespace
        size_t skipWhitespace();    //Prob should be private, but I don't believe in that private shit.
        bool hasNextWhitespace();
        std::string nextWhitespace();
        std::string nextWhitespaceAll();
        std::string nextLine();
};

//===============Source File==================
bool Scanner::fillBuffer() {    //Returns if it had to get the next line from the input.
    const bool badInput = input.eof() || input.bad();
    const bool shouldFillBuffer = bufferEmpty() && !badInput;
    if (shouldFillBuffer) {
        std::string line;
        if (std::getline(input, line)) {
            buffer.str(buffer.str() + line + "\n");
        }
    }
    return shouldFillBuffer;
}

bool Scanner::bufferEmpty(){
    return buffer.str() == "";
}
void Scanner::printBufferEmpty(){
    std::cout << "The buffer is " << (bufferEmpty()? "" : "not") << " empty." << std::endl;
}

std::string Scanner::getBuffer(){
    return buffer.str();
}
size_t Scanner::bufferLength(){
    return buffer.str().length();
}
void Scanner::printBufferStats(){
    if(bufferEmpty()){
        std::cout << "The buffer is \"\"" << std::endl;
        return;
    }
    std::cout << "The length of the buffer is " << bufferLength() << std::endl;
    if(buffer.sgetc() == '\r'){
        std::cout << "The buffer is \\r\\n" << std::endl;
    }else if(buffer.sgetc() == '\n'){
        std::cout << "The buffer is \\n" << std::endl;
    }
}

bool Scanner::hasNextInt() {
    return hasNextWord() && (std::isdigit(buffer.sgetc()) || buffer.sgetc() == '-');
}

int Scanner::nextInt() {
    if (!hasNextInt()) {   //Will fill the buffer if not filled. Will also trim whitespace.
        return 0;
    }
    
    std::string num;
    size_t charactersRead = 0;
    while (buffer.in_avail() > 0 && (std::isdigit(buffer.sgetc()) || buffer.sgetc() == '-')) {
        num += buffer.sbumpc();
        ++charactersRead;
    }
    buffer.str(buffer.str().erase(0, charactersRead));
    return std::stoi(num);
}

bool Scanner::hasNextWord() {
    nextWhitespaceAll();
    return buffer.in_avail() > 0;
}

std::string Scanner::nextWord() {
    if (!hasNextWord()) {   //Will fill the buffer if not filled. Will also trim whitespace.
        return "";
    }
    
    std::string word;
    size_t charactersRead = 0;
    while (buffer.in_avail() > 0 && !std::isspace(buffer.sgetc())) {
        word += buffer.sbumpc();
        ++charactersRead;
    }
    buffer.str(buffer.str().erase(0, charactersRead));
    return word;
}

bool Scanner::hasNextLine() {
    return (!bufferEmpty()) || fillBuffer();
}

size_t Scanner::skipWhitespace() {   //Returns characters read
    size_t charactersRead = 0;
    while (buffer.in_avail() > 0 && std::isspace(buffer.sgetc())) {
        buffer.sbumpc();
        ++charactersRead;
    }
    return charactersRead;
}
bool Scanner::hasNextWhitespace(){
    fillBuffer();
    return buffer.in_avail() > 0 && std::isspace(buffer.sgetc());
}
std::string Scanner::nextWhitespace() {
    if (!hasNextWhitespace()) {   //Will fill the buffer if not filled
        return "";
    }
    const size_t charactersRead = skipWhitespace();
    std::string whitespace = buffer.str().substr(charactersRead);
    buffer.str(buffer.str().erase(0, charactersRead));
    return whitespace;
}
std::string Scanner::nextWhitespaceAll(){
    std::string whitespace;
    while(hasNextWhitespace()){
        std::string gottenWhiteSpace = nextWhitespace();
        whitespace += gottenWhiteSpace;
    }
    return whitespace;
}
std::string Scanner::nextLine(){
    if (!hasNextLine()) {
        return "";
    }
    
    fillBuffer();
    //Swap out the old buffer with an empty buffer, and get the old buffer as a variable.
    std::string line = std::exchange(buffer, std::stringbuf()).str();
    
    //Remove the newline.
    if(line[line.length() - 1] == '\n' || line[line.length() - 1] == '\r' ) line.pop_back();
    if(line[line.length() - 1] == '\r' || line[line.length() - 1] == '\n' ) line.pop_back();
    return line;
}


//=================Word and Int test=================
while(bruh.hasNextInt() || bruh.hasNextWord()){
    std::cout << "started loop" << std::endl;
    if(bruh.hasNextInt()){
        std::cout << "Int: " << bruh.nextInt() << " " << std::endl;
    }else{
        std::cout << "Word: " << bruh.nextWord() << " " << std::endl;
    }
    bruh.nextWhitespace();
}
//===================Line test======================
for(int count = 1; bruh.hasNextLine(); ++count){
    std::string line = bruh.nextLine();
    std::cout << "Line " << count << ": " << line << std::endl;
}
#include "goat.h" //include goat.h

void Goat::setBreed(string breed) {
   this->breed = breed;
}
void Goat::setWeight(float weight) {
   this->weight = weight;
}
void Goat::setName(string name) {
   this->name = name;
}
void Goat::setGender(char gender) {
   this->gender = gender;
}
void Goat::setSpayed(bool goatIsSpayed) {
   this->goatIsSpayed = goatIsSpayed;
}
void Goat::setRegistrationID(string registrationID) {
   this->registrationID = registrationID;
}
void Goat::setColor(string color) {
   this->color = color;
}
void Goat::setOtherComments(string otherComments) {
   this->otherComments = otherComments;
}
string Goat::getBreed() {
   return breed;
}
float Goat::getWeight() {
   return weight;
}
string Goat::getName() {
   return name;
}
char Goat::getGender() {
   return gender;
}
bool Goat::getSpayed() {
   return goatIsSpayed;
}
string Goat::getRegistrationID() {
   return registrationID;
}
string Goat::getColor() {
   return color;
}
string Goat::getOtherComments() {
   return otherComments;
}

Goat::Goat() {
   breed = "";
   weight = 0.0;
   name = "";
   gender = '\0';
   goatIsSpayed = false;
   registrationID = "";
   color = "";
   otherComments = "";
}

Goat::Goat(string goatBreed, float goatWeight, string goatName, char goatGender, bool goatSpayedStatus, string goatRegistrationID, string goatColor, string goatOtherComments) {
  
   breed = goatBreed;
   weight = goatWeight;
   name = goatName;
   gender = goatGender;
   goatIsSpayed = goatSpayedStatus;
   registrationID = goatRegistrationID;
   color = goatColor;
   otherComments = goatOtherComments;
}

Goat::~Goat() {
   cout << "goat destroyed" << endl;
}

void Goat::printinfo() {  
   cout << "Breed: " << breed << endl << "weight: " << weight << endl << "Name: " << name << endl << "Gender: " << gender << endl << "is Spayed: ";
   if(goatIsSpayed) {  //here I do a logical test on boolean goatIsSpayed. if true cout << true else cout << false
      cout << "True";
   } else {
      cout << "False";
   }
   cout << endl << "Registration ID: " << registrationID << endl << "Color Description: " << color << endl << "Other Comments: " << otherComments << endl << endl;
}
/*
this program will simulate the spreading of a disease through a 
grid of people, starting from a user-defined person. It will count
the number of turns taken before everyone on the grid is immunized
to the disease after having caught it once.
This program will user the SIR model (Susceptible, Infectious, Recovered)
 and cellular automata to simulate the people in the grid.
*/
#include <iostream>
using namespace std;

/* Any and all global variables */
const int SIZE = 8; //Size of the square person array

/* Any and all functions */
void gridDefaultify(char[][SIZE], int);
	//Purpose: Sets each item in the person array to 's'
	//Parameters: A square, two-dimensional array
	//            The size of that array's bounds
void gridDisplay(char[][SIZE], int);
	//Purpose: Formats and prints the information in the person grid
	//Parameters: A square, two-dimensional array
	//            The value of the current day
void nextTurn(char[][SIZE], char[][SIZE], int&);
	//Purpose: Updates the grid of people, and the current day
	//Parameters: Two square, two-dimensional arrays
	//            A reference to the current day (so that it can be updated)
int countInfected(char[][SIZE], int);
	//Purpose: Counts the number of infectious people on the grid
	//Parameters: A square, two-dimensional array
	//            The size of that array's bounds


int main(){
	int currentDay = 0; //Infection begins on day 0, and ends one day after the last person is Recovered
	char gridCurrent[SIZE][SIZE]; //Grid of all people
	char gridUpdate[SIZE][SIZE]; //Where the user chooses to start the infection
	int xToInfect;
	int yToInfect; //Set of coordinates for the initial infection position, given by user
	
	//Initializes the grids to all 's'
	gridDefaultify(gridCurrent, SIZE);
	gridDefaultify(gridUpdate, SIZE);
	
	//The below block gets the initial infection coordinates from the user
	cout << "Please enter a location to infect: ";
	while(true){
		cin >> xToInfect >> yToInfect;

		xToInfect--;
		yToInfect--;
		
		if(xToInfect < 0 || yToInfect < 0 || xToInfect >= SIZE || yToInfect >= SIZE){
			cout << "Those coordinates are outside the bounds of this region." << endl;
			cout << "Please enter another location to infect: ";
			continue;
		} else {
			gridCurrent[xToInfect][yToInfect] = 'i';
			break;
		}
	}
	
	//Displays the initial state of the grid
	gridDisplay(gridCurrent, currentDay);
	
	//The below block will display and update the grid until the infection is done.
	while(true){
		nextTurn(gridCurrent, gridUpdate, currentDay);
		gridDisplay(gridCurrent, currentDay);
		if(countInfected(gridCurrent, SIZE) == 0) break; //Once there are no more infected, the game is done
	}
	
	//Displays the number of days taken for the infection to end
	cout << "It took " << currentDay + 1 << " days for the outbreak to end";
	
	cout << endl;
	return 0;
}

void gridDefaultify(char arr[][SIZE], int arrSize){
	for(int x = 0; x < arrSize; x++){
		for(int y = 0; y < arrSize; y++){
			arr[x][y] = 's'; //Sets all items in the passed-in array to 's'
		}
	}
	return;
}

void gridDisplay(char arr[][SIZE], int day){
	cout << "Day " << day << endl; //Prints the current day
	for(int x = 0; x < SIZE; x++){
		for(int y = 0; y < SIZE; y++){
			cout << arr[x][y] <<" "; //Prints the array's contents
		}
		cout << endl; //Formats with newlines
	}
	cout << endl; //Some spacing
	return;
}

void nextTurn(char today[][SIZE], char update[][SIZE], int& day){
	day++; //Updates the day
	int xCheck; //X coordinate to be checked
	int yCheck; //Y coordinate to be checked
	
	for(int x = 0; x < SIZE; x++){
		for(int y = 0; y < SIZE; y++){
			//Sets all 'i' to 'r' in the new grid
			if(today[x][y] == 'i' || today[x][y] == 'r'){
				update[x][y] = 'r'; //Updates all infectious to recovered, and keeps current recovered
			}
			if(today[x][y] == 's'){									// If the person is susceptible...
				for(int xCheck = x-1; xCheck <= x+1; xCheck++){		// Check all x coordinates around the person
					for(int yCheck = y-1; yCheck <= y+1; yCheck++){	// Check all y coordinates around the person
						if(xCheck == x && yCheck == y){
																	// Don't check at the person because there is no need to check there
						} else {
							if(xCheck >= 0 && yCheck >= 0 && xCheck < SIZE && yCheck < SIZE){ // Make sure the checked coordinates are in bounds
								if(today[xCheck][yCheck] == 'i'){	//Is the person at the checked coordinates infected?
									update[x][y] = 'i';				//If so, update the 's' to 'i' in the new grid
								}
							}
						}
					}
				}
			}
		}
	}
	
	for(int x = 0; x < SIZE; x++){
		for(int y = 0; y < SIZE; y++){
			today[x][y] = update[x][y]; //Updates today's grid with the new values
		}
	}
}

int countInfected(char arr[][SIZE], int arrSize){
	int count = 0;
	
	for(int x = 0; x < arrSize; x++){
		for(int y = 0; y < arrSize; y++){
			if(arr[x][y] == 'i') count++; //Increments count for each infected person in the grid
		}
	}
	
	return count;
}
#include <bits/stdc++.h>
#define MAXSIZE 50000
#define INF 100000

using namespace std;

vector<int> adj[MAXSIZE]; //Adjacency List

bool visited[MAXSIZE]; //Checks if a node is visited or not in BFS and DFS
bool isConnected = true; //Checks if the input graph is connected or not

int dist[MAXSIZE], discover[MAXSIZE], finish[MAXSIZE]; //Distance for BFS, in time and out time for DFS
int t = 1; //Time used for DFS
int u, v, i, j, k, N = 0;

stack<int> st; //Stack for TopSort

multiset<pair<int, int>> s; //collection of pairs to sort by distance
pair<int, int> current; //pointer variable to a position in the multiset

void BFS()
{
	queue<int> q; //queue for BFS
	q.push(1); //pushing the source
	dist[1] = 0; //assign the distance of source as 0
	visited[1] = 1; //marking as visited
	
	while(!q.empty())
	{
	u = q.front();
	q.pop();

	for(i=0; i < adj[u].size(); i++)
	{
	v = adj[u][i]; //Adjacent vertex

	if(!visited[v]) //if not visited, update the distance and push onto queue
	{
	visited[v] = 1;
	dist[v] = dist[u]+1;
	q.push(v);
	}

	}

	}
	
	for(i = 1; i <= N; i++)
	{
	s.insert(make_pair(dist[i], i)); //for sorted distance
	}
	
	cout << "BFS results:" << endl;
	
	//prints BFS results and checks if the graph is connected
	while(!s.empty())
	{
	current = *s.begin(); 
	s.erase(s.begin());

	i = current.second; 
	j = current.first;

	if(j == INF) //if any infinite value, graph is not connected
	{
	cout << i << " INF" << endl;
	isConnected = false;
	}
	else
	{
	cout << i << " " << j << endl;
	}

	}

	//marks blocks of memory as visited
	memset(visited, 0, sizeof visited);
}


void dfsSearch(int s)
{
	visited[s] = 1; //marking it visited
	discover[s] = t++; //assigning and incrementing time

	int i, v;

	for(i = 0; i < adj[s].size(); i++)
	{
	v = adj[s][i];

	if(!visited[v]) //if vertex is not visited then visit, else continue
	{
	dfsSearch(v);
	}

	}

	st.push(s); //pushed onto stack for TopSort if it was called
	finish[s] = t++; //out time
}

void DFS()
{

	for(i = 1; i <= N; i++)
	{
	if(visited[i]) //if visited continue, else visit it with DFS
	{
	continue;
	}

	dfsSearch(i); //embedded function to actually perform DFS
	}

	for(i=1;i<=N;i++)
	{
	s.insert(make_pair(discover[i], i)); //minheap for sorted discovery time
	}
	
	cout << "DFS results:" << endl;

	while(!s.empty()) //Prints DFS results as long as the multiset is not empty
	{
	current = *s.begin(); //duplicates the pointer to first object in the multiset
	s.erase(s.begin()); //erases the first object in multiset

	i = current.second;
	cout << i << " " << discover[i] << " " << finish[i] << endl; //prints discover times and finish times
	}

}

void TopSort()
{
	//call DFS so we can have a sorted stack to print
	for(i=1;i<=N;i++)
	{
	if(visited[i])
	{
	continue;
	}

	dfsSearch(i);
	}

	cout<<"Topological Sort results:"<<endl;

	//print sorted results from DFS
	while(!st.empty())
	{
	i = st.top(); 
	st.pop();

	cout << i << endl;
	}

	//declare blocks of memory as visited
	memset(visited, 0, sizeof visited);

}


int main()
{
	string str, num, input;
	int selection, connectedChoice = 0;


	//get to input any file, more freedom than declaring file in command line
	cout << "Enter the exact name of your input file [case sensitive]: ";
	cin >> input;
	
	ifstream inputFile(input); //Read the input file

	//checks if the ifstream cannot open
	if(inputFile.fail())
	{
	cout << endl << "No input files matching that name. Terminating..." << endl;
	return 0;
	}

	//Read until the end of file
	while(!inputFile.eof())
	{
	getline(inputFile, str); //read the current line

	if(str == "")
	{
	continue;
	}

	if(!isdigit(str[0])) //checks to see if the first item in a line is a digit or not
	{
	cout << "Invalid file format. You have a line beginning with a non-digit. Terminating..." << endl;
	return 0;
	}

	stringstream ss;
	ss << str; //convert the line to stream of strings
	
	ss >> num; //read the line num
	stringstream(num) >> u;
	
	while(!ss.eof())
	{
	ss>>num;
	if(stringstream(num) >> v)
	{
	adj[u].push_back(v); //read the adjacent vertices
	}
	}

	N++; //calculate the number of vertices
	sort(adj[u].begin(), adj[u].end()); //sort the adjacency list in case it is not sorted
	}
	
	//creates arbitrary values for distance, will check later if INF remain
	for(i = 1; i <= N; i++)
	{
	dist[i] = INF;
	}

	cout << endl << "Valid Input file loaded!" << endl;

	while(selection != 4)
	{
	cout << "************************************************" << endl;
	cout << "What type of analysis would you like to perform?" << endl;
	cout << "1: Breadth-First Search" << endl;
	cout << "2: Depth-First Search" << endl;
	cout << "3: Topological Sort" << endl;
	cout << "4: Quit" << endl;
	cout << "************************************************" << endl;
	
	//read user input and execute selection
	cin >> selection;

	switch(selection)
	{
	case 1:
	cout << endl;
	BFS();
	cout << endl;
	cout << "Would you like to know if the graph is connected?" << endl;
	cout << "1: Yes" << endl;
	cout << "Any other key: No" << endl;
	cin >> connectedChoice;

	switch(connectedChoice)
	{
	case 1:
	if(!isConnected)
	{
	cout << "The graph is not connected." << endl << endl;
	}
	else
	{
	cout << "The graph is connected!" << endl << endl;
	}
	break;
	default:
	break;
	}
	break;
	case 2:
	cout << endl;
	DFS();
	cout << endl;
	break;
	case 3:
	cout << endl;
	TopSort();
	cout << endl;
	break;
	case 4:
	return 0;
	default:
	cout << endl << "Invalid selection." << endl; //loops the selection prompt until a valid selection is input.
	}

	}
	
}